Its sources live in a public Git repository.įiji was accepted as organization into the Google Summer of Code 2009, and completed two projects. įiji was prominently featured in Nature Methods review supplement on visualization. The Fiji component TrakEM2 was successfully used and enhanced to analyze neuronal lineages in larval Drosophila brains. įiji is most popular in the life sciences community, where the 3D Viewer helps visualizing data obtained through light microscopy, and for which Fiji provides registration, segmentation, and other advanced image processing algorithms. As stated on the official website, the primary focus is "life sciences", although Fiji provides many tools helping with scientific image analysis in general. While Fiji was originally intended for neuroscientists (and continues to be so ), it accumulated enough functionality to attract scientists from a variety of fields, such as cell biology, parasitology, genetics, life sciences in general, materials science, etc. As a consequence, Fiji enjoys more and more active users. One of Fiji's principal aims is to make the installation of ImageJ, Java, Java 3D, the plugins, and further convenient components, as easy as possible. įurther, some plugins require specific versions of ImageJ, specific versions of third-party libraries, or additional Java components such as the Java compiler or Java 3D. Many plugins exist for ImageJ, that have a wide range of applications, but also a wide range of quality. Fiji features an integrated updating system and aims to provide users with a coherent menu structure, extensive documentation in the form of detailed algorithm descriptions and tutorials, and the ability to avoid the need to install multiple components from different sources.įiji is also targeted at developers, through the use of a version control system, an issue tracker, dedicated development channels, and a rapid-prototyping infrastructure in the form of a script editor which supports BeanShell, Jython, JRuby, Clojure, Groovy, JavaScript, and other scripting languages, as well as just-in-time Java development. GPL v3 (some plugins have different licenses )įiji ( Fiji Is Just ImageJ) is an open source image processing package based on ImageJ2.įiji's main purpose is to provide a distribution of ImageJ2 with many bundled plugins. IN PARTICULAR, THE AUTHOR DOES NOT MAKE ANY REPRESENTATION OR WARRANTY OF ANY KIND CONCERNING THE MERCHANTABILITY OF THIS SOFTWARE OR ITS FITNESS FOR ANY PARTICULAR PURPOSE./ September 14, 2022 16 months ago ( ) THIS SOFTWARE IS BEING PROVIDED “AS IS”, WITHOUT ANY EXPRESS OR IMPLIED WARRANTY. Any for profit use of this software is expressly forbidden without first obtaining the explicit consent of the author. Permission to use, copy, modify, and distribute this software for any purpose without fee is hereby granted, provided that this entire notice is included in all copies of any software which is or includes a copy or modification of this software and in all copies of the supporting documentation for such software. Li, “The image stabilizer plugin for ImageJ,”, February, 2008. Change logĠ: Optimized for speed using gradient pyramidsĢ: Performed further speed optimizations and bug fixesĤ: Added support for affine transformationĢ: Added support for macro recordering (thanks to Christophe Leterrier at )ġ: Added support for logging transformation coefficients (can be reapplied to another stack using Image Stabilizer Log Applier)ġ: The stabilization process can be interrupted by pressing ‘ESC’ or by closing the imageĠ: Fixed a runtime error when the user does not select the Log_Transformation_Coefficients checkbox (thanks to Nico Stuurman at UCSF)Ģ: Fixed a bug that affected 32-bit float input images (thanks to Derek Bailey) The plugin will prompt you for an output directory to store the stabilized image sequence. To process very large image stacks, import the stack with the “Use Virtual Stack” option enabled.
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |